Data Structures
alignment_info_array
alignment_info_s
blosum_dna_matrix
blosum_dna_matrix_t
blosum_iupac_matrix
blosum_iupac_matrix_t
char_array
clique_s
interval_array
interval_query_s
interval_s
matt_ygraph_s
neighbor_s
p_alignment_info
p_clique
p_interval
p_interval_query
p_matt_ygraph
p_neighbor
p_sequence
p_sequence_buffer
p_set_of_seqs
score_array
sequence_array
sequence_buffer_s
sequence_s
set_of_seqs_array
set_of_seqs_s
Data Fields
File List
src/alignment.c
src/alignment.h
src/aln_matrices.c
src/aln_matrices.h
src/blast_interface.h
src/buffer.h
src/carnac.h
src/io.c
src/io.h
src/macros.h
src/main.c
src/matt_ygraph.c
src/matt_ygraph.h
src/options.c
src/options.h
src/sequence.c
src/sequence.h
src/sequence_interface.h
src/types.h
Globals