- calculate_nb_al_function()
: matt_ygraph.c
, matt_ygraph.h
- calculate_score_function()
: matt_ygraph.h
, matt_ygraph.c
- call_carnac()
: carnac.h
- carnac_individual_energy()
: carnac.h
- check_parameters_validity()
: options.h
, options.c
- check_species_repetitions()
: matt_ygraph.c
, matt_ygraph.h
- compare_all_against_ref()
: matt_ygraph.c
, matt_ygraph.h
- compare_sort_id()
: matt_ygraph.c
- compare_sort_pos()
: alignment.h
, alignment.c
- complete_alignments_attributes()
: alignment.c
, alignment.h
- complete_sequences_attributes()
: sequence.c
, sequence.h
- complete_set_sequences()
: matt_ygraph.c
, matt_ygraph.h
- copy_alignment()
: alignment.c
, alignment.h
- copy_interval_query()
: matt_ygraph.h
, matt_ygraph.c
- parse_params()
: options.c
, options.h
- print_verbose_end_alignments()
: io.h
, io.c
- print_verbose_end_alignments_file()
: io.c
, io.h
- print_verbose_end_build_sets()
: io.h
, io.c
- print_verbose_end_check_repetitions()
: io.c
, io.h
- print_verbose_end_checking_repetitions_set()
: io.c
, io.h
- print_verbose_end_compare_ref()
: io.c
, io.h
- print_verbose_end_compare_ref_set()
: io.h
, io.c
- print_verbose_end_conserved_regions()
: io.c
, io.h
- print_verbose_end_maxi_clique_set()
: io.c
, io.h
- print_verbose_end_naive_clique_set()
: io.c
, io.h
- print_verbose_end_process()
: io.c
, io.h
- print_verbose_end_score()
: io.c
, io.h
- print_verbose_end_search_naive_clique()
: io.c
, io.h
- print_verbose_end_sequences()
: io.c
, io.h
- print_verbose_end_write_GFF3()
: io.h
, io.c
- print_verbose_end_write_multifasta()
: io.c
, io.h
- print_verbose_no_connect()
: io.c
, io.h
- print_verbose_sort_identity_ref()
: io.c
, io.h
- print_verbose_start_alignments()
: io.c
, io.h
- print_verbose_start_alignments_file()
: io.c
, io.h
- print_verbose_start_build_sets()
: io.h
, io.c
- print_verbose_start_check_repetitions()
: io.c
, io.h
- print_verbose_start_checking_repetitions_set()
: io.h
, io.c
- print_verbose_start_compare_ref()
: io.h
, io.c
- print_verbose_start_compare_ref_set()
: io.h
, io.c
- print_verbose_start_conserved_regions()
: io.h
, io.c
- print_verbose_start_maxi_clique_set()
: io.c
, io.h
- print_verbose_start_naive_clique_set()
: io.c
, io.h
- print_verbose_start_process()
: io.h
, io.c
- print_verbose_start_score()
: io.c
, io.h
- print_verbose_start_search_naive_clique()
: io.c
, io.h
- print_verbose_start_sequences()
: io.h
, io.c
- print_verbose_start_write_GFF3()
: io.c
, io.h
- print_verbose_start_write_multifasta()
: io.h
, io.c
Generated on Mon Sep 22 16:34:11 2008 for matt_ygraph by
1.5.5