Data Structures

Here are the data structures with brief descriptions:
alignment_info_arrayArray of alignments information
alignment_info_sStructure that implements an alignment
blosum_dna_matrixPointer on a blosum_dna_matrix_t
blosum_dna_matrix_tStructure that implements a basic blosum matrix
blosum_iupac_matrixPointer on a blosum_iupac_matrix_t
blosum_iupac_matrix_tStructure that implements an iupac blosum matrix
char_arrayArray of chars
clique_sStructure that implements a clique
interval_arrayArray of intervals
interval_query_sStructure that implements an interval on a query
interval_sStructure that implements an interval
matt_ygraph_sMain structure of the software
neighbor_sStructure that implements an array of neighbors
p_alignment_infoPointer on a alignment_info_s
p_cliquePointer on a clique_s
p_intervalPointer on an interval_s
p_interval_queryPointer on an interval_query_s
p_matt_ygraphPointer on a matt_ygraph_s
p_neighborPointer on a neighbor_s
p_sequencePointer on a sequence_s
p_sequence_bufferPointer on a sequence_buffer_s
p_set_of_seqsPointer on an set_of_seqs_s
score_arrayStructure that implements the array of scores
sequence_arrayArray of sequences structure
sequence_buffer_sBuffer sequence implementation
sequence_sSequence structure implementation
set_of_seqs_arrayArray of sets of sequences
set_of_seqs_sStructure that implements a set of sequences

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