src/aln_matrices.h File Reference

Header file for the management of matrices used in comparison. More...

This graph shows which files directly or indirectly include this file:


Defines

#define GET_NU_INDICE(Nu, Ii)
 Macros that will link basic nucleotides to its index in the basic matrix.
#define GET_IUPAC_INDICE(Nu, Ii)
 Macros that will link IUPAC nucleotides to its index in the IUPAC matrix.

Variables

blosum_dna_matrix_t dna_full
blosum_iupac_matrix_t iupac_full

Detailed Description

Header file for the management of matrices used in comparison.

Author:
Benjamin Grenier-Boley <benjamin.grenier-boley@inria.fr>
Version:
1.02
Date:
September 2008
This file will define all structures and pointers on theses that will be used in the software

Variable Documentation

Basic blosum matrix

Basic IUPAC blosum matrix

Referenced by aln(), and small_in_large().


Generated on Mon Sep 22 16:34:09 2008 for matt_ygraph by  doxygen 1.5.5