File List

Here is a list of all documented files with brief descriptions:
src/alignment.cFile that defines all functions related to alignments
src/alignment.hHeader file that defines all functions related to alignments
src/aln_matrices.cFile that contains functions for the mangement of matrices
src/aln_matrices.hHeader file for the management of matrices used in comparison
src/blast_interface.hHeader file for the interface between the Flex/Bison parser and this software
src/buffer.hHeader file for the management of buffers
src/carnac.hFile tha contains functions for the carnac mangement
src/io.cFile that defines the IN/OUT definitions and functions
src/io.hHeader file that defines the IN/OUT definitions and functions
src/macros.hHeader file that defines all macros definitions
src/main.cFile that defines the main software function
src/matt_ygraph.cFile that all functions used to retrieve conserved regions and select some
src/matt_ygraph.hHeader file that contains all functions used to retrieve conserved regions and select some
src/options.cFile that defines the software options
src/options.hHeader file that defines the software options
src/sequence.cFile that defines all functions related to sequences
src/sequence.hHeader file that defines all functions related to sequences
src/sequence_interface.hHeader file for the interface between the Flex/Bison parser and this software
src/types.hHeader file that defines all structures used in this software

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