alignment_info_s Struct Reference

Structure that implements an alignment. More...

#include <types.h>


Data Fields

char * name_ref
int index_ref
char * name_query
int index_query
float identity
int al_length
int nb_mismatches
int nb_gaps_open
int pos_start_ref
int pos_end_ref
int pos_start_query
int pos_end_query
float evalue
float bit_score
char strand_ref
char strand_query


Detailed Description

Structure that implements an alignment.

That structure will implement a structure that will contain all information about an alignment extracted from the alignment files


Field Documentation

Name of the reference sequence

Index of the reference sequence in the sequence array

Name of the query sequence

Index of the query sequence in the sequence array

Identity of the alignment

Length of the alignment

Number of mismatches

Number of gap openings

Starting position of match in the ref sequence

Starting position of match in the ref sequence

Starting position of match in the query sequence

Starting position of match in the query sequence

Evalue of the alignment

Bit score of the alignment

Strand of the alignment on the ref

Strand of the alignment on the query


The documentation for this struct was generated from the following file:

Generated on Mon Sep 22 16:34:11 2008 for matt_ygraph by  doxygen 1.5.5