Here is a list of all documented functions, variables, defines, enums, and typedefs with links to the documentation:
- parse_params()
: options.c
, options.h
- PRINT_
: io.h
- print_verbose_end_alignments()
: io.c
, io.h
- print_verbose_end_alignments_file()
: io.c
, io.h
- print_verbose_end_build_sets()
: io.c
, io.h
- print_verbose_end_check_repetitions()
: io.c
, io.h
- print_verbose_end_checking_repetitions_set()
: io.c
, io.h
- print_verbose_end_compare_ref()
: io.c
, io.h
- print_verbose_end_compare_ref_set()
: io.c
, io.h
- print_verbose_end_conserved_regions()
: io.c
, io.h
- print_verbose_end_maxi_clique_set()
: io.c
, io.h
- print_verbose_end_naive_clique_set()
: io.c
, io.h
- print_verbose_end_process()
: io.c
, io.h
- print_verbose_end_score()
: io.c
, io.h
- print_verbose_end_search_naive_clique()
: io.c
, io.h
- print_verbose_end_sequences()
: io.c
, io.h
- print_verbose_end_write_GFF3()
: io.c
, io.h
- print_verbose_end_write_multifasta()
: io.c
, io.h
- print_verbose_no_connect()
: io.c
, io.h
- print_verbose_sort_identity_ref()
: io.c
, io.h
- print_verbose_start_alignments()
: io.c
, io.h
- print_verbose_start_alignments_file()
: io.h
, io.c
- print_verbose_start_build_sets()
: io.c
, io.h
- print_verbose_start_check_repetitions()
: io.c
, io.h
- print_verbose_start_checking_repetitions_set()
: io.c
, io.h
- print_verbose_start_compare_ref()
: io.c
, io.h
- print_verbose_start_compare_ref_set()
: io.h
, io.c
- print_verbose_start_conserved_regions()
: io.c
, io.h
- print_verbose_start_maxi_clique_set()
: io.h
, io.c
- print_verbose_start_naive_clique_set()
: io.h
, io.c
- print_verbose_start_process()
: io.h
, io.c
- print_verbose_start_score()
: io.c
, io.h
- print_verbose_start_search_naive_clique()
: io.c
, io.h
- print_verbose_start_sequences()
: io.c
, io.h
- print_verbose_start_write_GFF3()
: io.c
, io.h
- print_verbose_start_write_multifasta()
: io.c
, io.h
- PROG_CARNAC
: options.h
- PROG_DYN_LINEAR_INDEX
: alignment.c
- PROG_DYN_LINEAR_INDEX_REF
: alignment.c