src/main.c File Reference

File that defines the main software function. More...

#include <sys/time.h>
#include "io.h"
#include "types.h"
#include "macros.h"
#include "options.h"
#include "sequence.h"
#include "alignment.h"
#include "matt_ygraph.h"

Include dependency graph for main.c:


Functions

int main (int argc, char **argv)
 Main function.

Detailed Description

File that defines the main software function.

Author:
Benjamin Grenier-Boley <benjamin.grenier-boley@inria.fr>
Version:
1.02
Date:
September 2008
This file represents the main entrance of the software and contains the main software algorithm

Function Documentation

int main ( int  argc,
char **  argv 
)

Main function.

Parameters:
[in] argc : number of parameters
[in] argv : the parameters
Returns:
an integer representing the main exit status
This function contains the main step algorithm of the software

References calculate_nb_al_function(), calculate_score_function(), check_parameters_validity(), check_species_repetitions(), compare_all_against_ref(), complete_alignments_attributes(), complete_sequences_attributes(), DESTROY, destroy_main_structure(), destroy_options(), get_interesting_regions(), get_sequences(), get_sets_of_sequences(), maxi_clique_search(), NEW, OPTS_max_species_repet, OPTS_output_format, OPTS_selecting_mode, OPTS_verbose, parse_params(), print_verbose_end_alignments(), print_verbose_end_build_sets(), print_verbose_end_check_repetitions(), print_verbose_end_compare_ref(), print_verbose_end_conserved_regions(), print_verbose_end_process(), print_verbose_end_score(), print_verbose_end_search_naive_clique(), print_verbose_end_sequences(), print_verbose_end_write_GFF3(), print_verbose_end_write_multifasta(), print_verbose_sort_identity_ref(), print_verbose_start_alignments(), print_verbose_start_build_sets(), print_verbose_start_check_repetitions(), print_verbose_start_compare_ref(), print_verbose_start_conserved_regions(), print_verbose_start_process(), print_verbose_start_score(), print_verbose_start_search_naive_clique(), print_verbose_start_sequences(), print_verbose_start_write_GFF3(), print_verbose_start_write_multifasta(), read_alignments_files(), search_naive_clique(), sort_identity_ref(), usage(), write_GFF3(), and write_multifasta().


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